HRGM_Genome_1323 - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00006_HRGM_G.. (original name was: HRGM_Genome_1323_6) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	terpene	67,165	88,001
Region 6.2	lanthipeptide,bacteriocin	131,382	154,414

c00007_HRGM_G.. (original name was: HRGM_Genome_1323_7) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	terpene	114,143	125,071

Region	Type	From	To	Similarity
Region 6.1	terpene	67,165	88,001
Region 6.2	lanthipeptide,bacteriocin	131,382	154,414
Region 7.1	terpene	114,143	125,071

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_1323_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_1323_2) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_1323_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_1323_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_1323_5) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_1323_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_1323_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_1323_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_1323_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_1323_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_1323_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_1323_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_1323_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_1323_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_1323_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_1323_18) (Genus species)

Compact view

c00006_HRGM_G.. - Region 1 - terpene

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Location: 67,165 - 88,001 nt. (total: 20,837 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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ClusterBlast

KnownClusterBlast

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Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00006_HRGM_G.. - Region 2 - bacteriocin,lanthipeptide

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Location: 131,382 - 154,414 nt. (total: 23,033 nt) Show pHMM detection rules used

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Lanthipeptides

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KnownClusterBlast

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Lanthipeptide predictions

Lanthipeptide(s) for HRGM_Genome_1323_CDS_01455 - Putative Class II

allorf_145866_146027 leader / core peptide: VLSDVHGG - KYFLLNRQFDhaCRKDhaDhaGRHEADIEFADhaQYIILPLRPMHDDhaFLDhaFDhaP
allorf_139825_139992 leader / core peptide: MKYSDRLRLRTLLGK - RKRQFIINVAKLAYDhaDhbGDIFPLFYQKINENCQKGGYKKIL

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

Lanthipeptides

Core peptide predictions

allorf_145866_146027 - Class II

Cleavage pHMM score: -0.80

RODEO score: 0

Monoisotopic mass: 5204.7 Da

Molecular weight: 5207.9 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 5225.9 Da N = 1; 5244.0 Da N = 2; 5262.0 Da N = 3; 5280.0 Da N = 4; 5298.0 Da N = 5; 5316.0 Da N = 6

allorf_139825_139992 - Class II

Cleavage pHMM score: -5.50

RODEO score: 0

Monoisotopic mass: 4668.6 Da

Molecular weight: 4671.5 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 4689.5 Da N = 1

c00007_HRGM_G.. - Region 1 - terpene

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Location: 114,143 - 125,071 nt. (total: 10,929 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.