HRGM_Genome_1619 - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00020_HRGM_G.. (original name was: HRGM_Genome_1619_20) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	bacteriocin	19,254	30,132

c00041_HRGM_G.. (original name was: HRGM_Genome_1619_41) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	lanthipeptide	1	11,954

c00043_HRGM_G.. (original name was: HRGM_Genome_1619_43) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	T3PKS	1	15,042

c00051_HRGM_G.. (original name was: HRGM_Genome_1619_51) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	bacteriocin	1	5,225

Region	Type	From	To	Similarity
Region 20.1	bacteriocin	19,254	30,132
Region 41.1	lanthipeptide	1	11,954
Region 43.1	T3PKS	1	15,042
Region 51.1	bacteriocin	1	5,225

No secondary metabolite regions were found in these records:: c00001_HRGM_G.. (original name was: HRGM_Genome_1619_1) (Genus species); c00002_HRGM_G.. (original name was: HRGM_Genome_1619_2) (Genus species); c00003_HRGM_G.. (original name was: HRGM_Genome_1619_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_1619_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_1619_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_1619_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_1619_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_1619_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_1619_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_1619_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_1619_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_1619_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_1619_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_1619_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_1619_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_1619_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_1619_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_1619_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_1619_19) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_1619_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_1619_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_1619_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_1619_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_1619_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_1619_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_1619_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_1619_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_1619_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_1619_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_1619_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_1619_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_1619_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_1619_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_1619_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_1619_36) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_1619_37) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_1619_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_1619_39) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_1619_40) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_1619_42) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_1619_44) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_1619_45) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_1619_46) (Genus species); c00047_HRGM_G.. (original name was: HRGM_Genome_1619_47) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_1619_48) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_1619_49) (Genus species); c00050_HRGM_G.. (original name was: HRGM_Genome_1619_50) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_1619_52) (Genus species); c00053_HRGM_G.. (original name was: HRGM_Genome_1619_53) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_1619_54) (Genus species); c00055_HRGM_G.. (original name was: HRGM_Genome_1619_55) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_1619_56) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_1619_57) (Genus species); c00058_HRGM_G.. (original name was: HRGM_Genome_1619_58) (Genus species); c00059_HRGM_G.. (original name was: HRGM_Genome_1619_59) (Genus species); c00060_HRGM_G.. (original name was: HRGM_Genome_1619_60) (Genus species); c00061_HRGM_G.. (original name was: HRGM_Genome_1619_61) (Genus species); c00062_HRGM_G.. (original name was: HRGM_Genome_1619_62) (Genus species); c00063_HRGM_G.. (original name was: HRGM_Genome_1619_63) (Genus species); c00064_HRGM_G.. (original name was: HRGM_Genome_1619_64) (Genus species); c00065_HRGM_G.. (original name was: HRGM_Genome_1619_65) (Genus species); c00066_HRGM_G.. (original name was: HRGM_Genome_1619_66) (Genus species); c00067_HRGM_G.. (original name was: HRGM_Genome_1619_67) (Genus species); c00068_HRGM_G.. (original name was: HRGM_Genome_1619_68) (Genus species); c00069_HRGM_G.. (original name was: HRGM_Genome_1619_69) (Genus species); c00070_HRGM_G.. (original name was: HRGM_Genome_1619_70) (Genus species); c00071_HRGM_G.. (original name was: HRGM_Genome_1619_71) (Genus species); c00072_HRGM_G.. (original name was: HRGM_Genome_1619_72) (Genus species); c00073_HRGM_G.. (original name was: HRGM_Genome_1619_73) (Genus species); c00074_HRGM_G.. (original name was: HRGM_Genome_1619_74) (Genus species); c00075_HRGM_G.. (original name was: HRGM_Genome_1619_75) (Genus species); c00076_HRGM_G.. (original name was: HRGM_Genome_1619_76) (Genus species); c00077_HRGM_G.. (original name was: HRGM_Genome_1619_77) (Genus species); c00078_HRGM_G.. (original name was: HRGM_Genome_1619_78) (Genus species); c00079_HRGM_G.. (original name was: HRGM_Genome_1619_79) (Genus species); c00080_HRGM_G.. (original name was: HRGM_Genome_1619_80) (Genus species); c00081_HRGM_G.. (original name was: HRGM_Genome_1619_81) (Genus species); c00082_HRGM_G.. (original name was: HRGM_Genome_1619_82) (Genus species); c00083_HRGM_G.. (original name was: HRGM_Genome_1619_83) (Genus species); c00084_HRGM_G.. (original name was: HRGM_Genome_1619_84) (Genus species); c00085_HRGM_G.. (original name was: HRGM_Genome_1619_85) (Genus species); c00086_HRGM_G.. (original name was: HRGM_Genome_1619_86) (Genus species); c00087_HRGM_G.. (original name was: HRGM_Genome_1619_87) (Genus species); c00088_HRGM_G.. (original name was: HRGM_Genome_1619_88) (Genus species); c00089_HRGM_G.. (original name was: HRGM_Genome_1619_89) (Genus species); c00090_HRGM_G.. (original name was: HRGM_Genome_1619_90) (Genus species); c00091_HRGM_G.. (original name was: HRGM_Genome_1619_91) (Genus species); c00092_HRGM_G.. (original name was: HRGM_Genome_1619_92) (Genus species); c00093_HRGM_G.. (original name was: HRGM_Genome_1619_93) (Genus species); c00094_HRGM_G.. (original name was: HRGM_Genome_1619_94) (Genus species); c00095_HRGM_G.. (original name was: HRGM_Genome_1619_95) (Genus species); c00096_HRGM_G.. (original name was: HRGM_Genome_1619_96) (Genus species); c00097_HRGM_G.. (original name was: HRGM_Genome_1619_97) (Genus species); c00098_HRGM_G.. (original name was: HRGM_Genome_1619_98) (Genus species); c00099_HRGM_G.. (original name was: HRGM_Genome_1619_99) (Genus species); c00100_HRGM_G.. (original name was: HRGM_Genome_1619_100) (Genus species); c00101_HRGM_G.. (original name was: HRGM_Genome_1619_101) (Genus species); c00102_HRGM_G.. (original name was: HRGM_Genome_1619_102) (Genus species); c00103_HRGM_G.. (original name was: HRGM_Genome_1619_103) (Genus species); c00104_HRGM_G.. (original name was: HRGM_Genome_1619_104) (Genus species); c00105_HRGM_G.. (original name was: HRGM_Genome_1619_105) (Genus species)

Compact view

c00020_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 19,254 - 30,132 nt. (total: 10,879 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00041_HRGM_G.. - Region 1 - lanthipeptide

Download region GenBank file

Location: 1 - 11,954 nt. (total: 11,954 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Lanthipeptides

ClusterBlast

KnownClusterBlast

SubClusterBlast

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00043_HRGM_G.. - Region 1 - T3PKS

Download region GenBank file

Location: 1 - 15,042 nt. (total: 15,042 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00051_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 1 - 5,225 nt. (total: 5,225 nt) Show pHMM detection rules used

Region on contig edge.

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.