HRGM_Genome_1877 - 4 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00001_HRGM_G.. (original name was: HRGM_Genome_1877_1) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	bacteriocin	213,827	224,684

c00002_HRGM_G.. (original name was: HRGM_Genome_1877_2) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NRPS	69,879	117,334	streptobactin	NRP	17%

c00007_HRGM_G.. (original name was: HRGM_Genome_1877_7) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	hserlactone	95,608	116,228

c00011_HRGM_G.. (original name was: HRGM_Genome_1877_11) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	bacteriocin	77,875	88,723

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	bacteriocin	213,827	224,684
Region 2.1	NRPS	69,879	117,334	streptobactin	NRP	17%
Region 7.1	hserlactone	95,608	116,228
Region 11.1	bacteriocin	77,875	88,723

No secondary metabolite regions were found in these records:: c00003_HRGM_G.. (original name was: HRGM_Genome_1877_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_1877_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_1877_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_1877_6) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_1877_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_1877_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_1877_10) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_1877_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_1877_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_1877_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_1877_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_1877_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_1877_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_1877_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_1877_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_1877_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_1877_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_1877_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_1877_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_1877_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_1877_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_1877_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_1877_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_1877_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_1877_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_1877_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_1877_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_1877_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_1877_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_1877_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_1877_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_1877_36) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_1877_37) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_1877_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_1877_39) (Genus species); c00040_HRGM_G.. (original name was: HRGM_Genome_1877_40) (Genus species); c00041_HRGM_G.. (original name was: HRGM_Genome_1877_41) (Genus species); c00042_HRGM_G.. (original name was: HRGM_Genome_1877_42) (Genus species); c00043_HRGM_G.. (original name was: HRGM_Genome_1877_43) (Genus species); c00044_HRGM_G.. (original name was: HRGM_Genome_1877_44) (Genus species); c00045_HRGM_G.. (original name was: HRGM_Genome_1877_45) (Genus species); c00046_HRGM_G.. (original name was: HRGM_Genome_1877_46) (Genus species); c00047_HRGM_G.. (original name was: HRGM_Genome_1877_47) (Genus species); c00048_HRGM_G.. (original name was: HRGM_Genome_1877_48) (Genus species); c00049_HRGM_G.. (original name was: HRGM_Genome_1877_49) (Genus species); c00050_HRGM_G.. (original name was: HRGM_Genome_1877_50) (Genus species); c00051_HRGM_G.. (original name was: HRGM_Genome_1877_51) (Genus species); c00052_HRGM_G.. (original name was: HRGM_Genome_1877_52) (Genus species); c00053_HRGM_G.. (original name was: HRGM_Genome_1877_53) (Genus species); c00054_HRGM_G.. (original name was: HRGM_Genome_1877_54) (Genus species); c00055_HRGM_G.. (original name was: HRGM_Genome_1877_55) (Genus species); c00056_HRGM_G.. (original name was: HRGM_Genome_1877_56) (Genus species); c00057_HRGM_G.. (original name was: HRGM_Genome_1877_57) (Genus species); c00058_HRGM_G.. (original name was: HRGM_Genome_1877_58) (Genus species); c00059_HRGM_G.. (original name was: HRGM_Genome_1877_59) (Genus species); c00060_HRGM_G.. (original name was: HRGM_Genome_1877_60) (Genus species); c00061_HRGM_G.. (original name was: HRGM_Genome_1877_61) (Genus species); c00062_HRGM_G.. (original name was: HRGM_Genome_1877_62) (Genus species); c00063_HRGM_G.. (original name was: HRGM_Genome_1877_63) (Genus species); c00064_HRGM_G.. (original name was: HRGM_Genome_1877_64) (Genus species); c00065_HRGM_G.. (original name was: HRGM_Genome_1877_65) (Genus species); c00066_HRGM_G.. (original name was: HRGM_Genome_1877_66) (Genus species); c00067_HRGM_G.. (original name was: HRGM_Genome_1877_67) (Genus species); c00068_HRGM_G.. (original name was: HRGM_Genome_1877_68) (Genus species); c00069_HRGM_G.. (original name was: HRGM_Genome_1877_69) (Genus species); c00070_HRGM_G.. (original name was: HRGM_Genome_1877_70) (Genus species); c00071_HRGM_G.. (original name was: HRGM_Genome_1877_71) (Genus species); c00072_HRGM_G.. (original name was: HRGM_Genome_1877_72) (Genus species); c00073_HRGM_G.. (original name was: HRGM_Genome_1877_73) (Genus species); c00074_HRGM_G.. (original name was: HRGM_Genome_1877_74) (Genus species); c00075_HRGM_G.. (original name was: HRGM_Genome_1877_75) (Genus species); c00076_HRGM_G.. (original name was: HRGM_Genome_1877_76) (Genus species); c00077_HRGM_G.. (original name was: HRGM_Genome_1877_77) (Genus species); c00078_HRGM_G.. (original name was: HRGM_Genome_1877_78) (Genus species); c00079_HRGM_G.. (original name was: HRGM_Genome_1877_79) (Genus species); c00080_HRGM_G.. (original name was: HRGM_Genome_1877_80) (Genus species); c00081_HRGM_G.. (original name was: HRGM_Genome_1877_81) (Genus species); c00082_HRGM_G.. (original name was: HRGM_Genome_1877_82) (Genus species); c00083_HRGM_G.. (original name was: HRGM_Genome_1877_83) (Genus species); c00084_HRGM_G.. (original name was: HRGM_Genome_1877_84) (Genus species); c00085_HRGM_G.. (original name was: HRGM_Genome_1877_85) (Genus species); c00086_HRGM_G.. (original name was: HRGM_Genome_1877_86) (Genus species); c00087_HRGM_G.. (original name was: HRGM_Genome_1877_87) (Genus species); c00088_HRGM_G.. (original name was: HRGM_Genome_1877_88) (Genus species); c00089_HRGM_G.. (original name was: HRGM_Genome_1877_89) (Genus species)

Compact view

c00001_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 213,827 - 224,684 nt. (total: 10,858 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00002_HRGM_G.. - Region 1 - NRPS

Download region GenBank file

Location: 69,879 - 117,334 nt. (total: 47,456 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 69878 - 117334:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_1877_CDS_00424

Search NORINE for peptide: strict or relaxed

AMP-binding (32..450): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPAQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 100% (strong)

HRGM_Genome_1877_CDS_00427

Search NORINE for peptide: strict or relaxed

AMP-binding (476..873): ser

NRPSPredictor2: ser

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

c00007_HRGM_G.. - Region 1 - hserlactone

Download region GenBank file

Location: 95,608 - 116,228 nt. (total: 20,621 nt) Show pHMM detection rules used

hserlactone: Autoind_synth

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00011_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 77,875 - 88,723 nt. (total: 10,849 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.