HRGM_Genome_1880 - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00001_HRGM_G.. (original name was: HRGM_Genome_1880_1) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	bacteriocin	354,622	365,464

c00002_HRGM_G.. (original name was: HRGM_Genome_1880_2) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NRPS	241,077	295,414	amonabactin P 750	NRP	100%

c00006_HRGM_G.. (original name was: HRGM_Genome_1880_6) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	hserlactone	191,025	211,651

Region	Type	From	To	Most similar known cluster	Similarity
Region 1.1	bacteriocin	354,622	365,464
Region 2.1	NRPS	241,077	295,414	amonabactin P 750	NRP	100%
Region 6.1	hserlactone	191,025	211,651

No secondary metabolite regions were found in these records:: c00003_HRGM_G.. (original name was: HRGM_Genome_1880_3) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_1880_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_1880_5) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_1880_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_1880_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_1880_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_1880_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_1880_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_1880_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_1880_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_1880_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_1880_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_1880_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_1880_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_1880_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_1880_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_1880_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_1880_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_1880_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_1880_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_1880_24) (Genus species); c00025_HRGM_G.. (original name was: HRGM_Genome_1880_25) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_1880_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_1880_27) (Genus species)

Compact view

c00001_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 354,622 - 365,464 nt. (total: 10,843 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00002_HRGM_G.. - Region 1 - NRPS

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Location: 241,077 - 295,414 nt. (total: 54,338 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

ClusterBlast

KnownClusterBlast

SubClusterBlast

Detailed domain annotation

Selected features only

Show module domains

Similar gene clusters

Similar known gene clusters

Similar subclusters

No matches found.

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 241076 - 295414:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

HRGM_Genome_1880_CDS_00859

Search NORINE for peptide: strict or relaxed

AMP-binding (56..424): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGcVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

HRGM_Genome_1880_CDS_00860

Search NORINE for peptide: strict or relaxed

AMP-binding (537..923): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAmigGMVtK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

HRGM_Genome_1880_CDS_00862

Search NORINE for peptide: strict or relaxed

AMP-binding (456..846): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAeDIGtVvK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 70% (weak)

HRGM_Genome_1880_CDS_00864

Search NORINE for peptide: strict or relaxed

AMP-binding (36..446): dhb

NRPSPredictor2: dhb

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: PLPsQGVVNK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 90% (moderate)

c00006_HRGM_G.. - Region 1 - hserlactone

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Location: 191,025 - 211,651 nt. (total: 20,627 nt) Show pHMM detection rules used

hserlactone: Autoind_synth

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.