HRGM_Genome_2205 - 3 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

c00001_HRGM_G.. (original name was: HRGM_Genome_2205_1) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	bacteriocin	6,387	17,334

c00003_HRGM_G.. (original name was: HRGM_Genome_2205_3) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	LAP	1	19,508

c00025_HRGM_G.. (original name was: HRGM_Genome_2205_25) (Genus species)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	bacteriocin	296,306	305,539

Region	Type	From	To	Similarity
Region 1.1	bacteriocin	6,387	17,334
Region 3.1	LAP	1	19,508
Region 25.1	bacteriocin	296,306	305,539

No secondary metabolite regions were found in these records:: c00002_HRGM_G.. (original name was: HRGM_Genome_2205_2) (Genus species); c00004_HRGM_G.. (original name was: HRGM_Genome_2205_4) (Genus species); c00005_HRGM_G.. (original name was: HRGM_Genome_2205_5) (Genus species); c00006_HRGM_G.. (original name was: HRGM_Genome_2205_6) (Genus species); c00007_HRGM_G.. (original name was: HRGM_Genome_2205_7) (Genus species); c00008_HRGM_G.. (original name was: HRGM_Genome_2205_8) (Genus species); c00009_HRGM_G.. (original name was: HRGM_Genome_2205_9) (Genus species); c00010_HRGM_G.. (original name was: HRGM_Genome_2205_10) (Genus species); c00011_HRGM_G.. (original name was: HRGM_Genome_2205_11) (Genus species); c00012_HRGM_G.. (original name was: HRGM_Genome_2205_12) (Genus species); c00013_HRGM_G.. (original name was: HRGM_Genome_2205_13) (Genus species); c00014_HRGM_G.. (original name was: HRGM_Genome_2205_14) (Genus species); c00015_HRGM_G.. (original name was: HRGM_Genome_2205_15) (Genus species); c00016_HRGM_G.. (original name was: HRGM_Genome_2205_16) (Genus species); c00017_HRGM_G.. (original name was: HRGM_Genome_2205_17) (Genus species); c00018_HRGM_G.. (original name was: HRGM_Genome_2205_18) (Genus species); c00019_HRGM_G.. (original name was: HRGM_Genome_2205_19) (Genus species); c00020_HRGM_G.. (original name was: HRGM_Genome_2205_20) (Genus species); c00021_HRGM_G.. (original name was: HRGM_Genome_2205_21) (Genus species); c00022_HRGM_G.. (original name was: HRGM_Genome_2205_22) (Genus species); c00023_HRGM_G.. (original name was: HRGM_Genome_2205_23) (Genus species); c00024_HRGM_G.. (original name was: HRGM_Genome_2205_24) (Genus species); c00026_HRGM_G.. (original name was: HRGM_Genome_2205_26) (Genus species); c00027_HRGM_G.. (original name was: HRGM_Genome_2205_27) (Genus species); c00028_HRGM_G.. (original name was: HRGM_Genome_2205_28) (Genus species); c00029_HRGM_G.. (original name was: HRGM_Genome_2205_29) (Genus species); c00030_HRGM_G.. (original name was: HRGM_Genome_2205_30) (Genus species); c00031_HRGM_G.. (original name was: HRGM_Genome_2205_31) (Genus species); c00032_HRGM_G.. (original name was: HRGM_Genome_2205_32) (Genus species); c00033_HRGM_G.. (original name was: HRGM_Genome_2205_33) (Genus species); c00034_HRGM_G.. (original name was: HRGM_Genome_2205_34) (Genus species); c00035_HRGM_G.. (original name was: HRGM_Genome_2205_35) (Genus species); c00036_HRGM_G.. (original name was: HRGM_Genome_2205_36) (Genus species); c00037_HRGM_G.. (original name was: HRGM_Genome_2205_37) (Genus species); c00038_HRGM_G.. (original name was: HRGM_Genome_2205_38) (Genus species); c00039_HRGM_G.. (original name was: HRGM_Genome_2205_39) (Genus species)

Compact view

c00001_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 6,387 - 17,334 nt. (total: 10,948 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

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core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00003_HRGM_G.. - Region 1 - LAP

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Location: 1 - 19,508 nt. (total: 19,508 nt) Show pHMM detection rules used

Region on contig edge.

LAP: ((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.

c00025_HRGM_G.. - Region 1 - bacteriocin

Download region GenBank file

Location: 296,306 - 305,539 nt. (total: 9,234 nt) Show pHMM detection rules used

Region on contig edge.

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

ClusterBlast

KnownClusterBlast

SubClusterBlast

Similar gene clusters

Similar known gene clusters

No matches found.

Similar subclusters

No matches found.